NeoFox - NEOantigen Feature tOolboX

Contents:

• Overview
  • About NeoFox
  • Contact information
  • How to cite
• Installation
  • Build and run the docker image
  • Step by step guide without docker
  • Test installation
• User guide
  • Input data
  • Output data
  • Usage
  • Examples
• Developer guide
  • Installation of neofox via poetry
  • Installation via pip
  • Testing
  • Logging
  • Build the protocol buffers models
  • Setup poetry
• Data models
  • Table of Contents
  • neoantigen.proto
  • Scalar Value Types